Members

Prof.
Kazuki TAINAKA
Assist. Prof.
Hitoshi UCHIDA
Assist. Prof.
Xinyi LIU

Research Focus

Our department develops tissue clearing techniques combined with high-speed three-dimensional fluorescence imaging to establish "3D neuropathology" of the brain and other tissues. Recently, we developed SeeThrough, a skull-clearing reagent that enables minimally invasive, longitudinal imaging of the living mouse brain without skull removal (Liu et al., Nat Commun, 2025). We also rationally designed an activatable covalent fluorescent probe compatible with tissue clearing, enabling whole-body and whole-organ 3D mapping of tissue hypoxia (Sakamoto et al., ACS Nano, 2024). In an international collaboration, we have further contributed to whole-brain cell mapping by combining highly multiplexed in situ hybridization with AI-driven analysis (Murakami et al., Neuron, 2026). Building on these tissue-clearing platforms, we aim to elucidate disease mechanisms and translate these technologies into next-generation diagnosis and treatment of neurological disorders.

Light-sheet fluorescence microscope MVX10-LS (Olympus), used for wide-field 3D imaging of medium-sized cleared samples such as mouse brain.
Light-sheet fluorescence microscope BLAZE (Miltenyi Biotec), used for high-speed, high-resolution 3D imaging of large cleared samples such as whole brains and whole organs.
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